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Willie Taylor Publications

Coluzza, I; Macdonald, JT; Sadowski, MI; Taylor, WR and Goldstein, RA (2012)
Analytic Markovian rates for generalized protein structure evolution.
PLOS ONE 7, e34228 PubMed abstract
Grant, J; Mahadevaiah, SK; Khil, P; Sangrithi, MN; Royo, H; Duckworth, J; McCarrey, JR; VandeBerg, JL; Renfree, MB; Taylor, W; Elgar, G; Camerini-Otero, RD; Gilchrist, MJ and Turner, JM (2012)
Rsx is a metatherian RNA with Xist-like properties in X-chromosome inactivation.
Nature 487, 254-U1511 PubMed abstract
Katsimitsoulia, Z and Taylor, WR (2012)
Coarse-grained simulation of myosin-V movement.
Computational and Mathematical Methods in Medicine 781456 PubMed abstract
Sadowski, MI and Taylor, WR (2012)
Evolutionary inaccuracy of pairwise structural alignments.
Bioinformatics 28, 1209-1215
Taylor, WR; Jones, DT and Sadowski, MI (2012)
Protein topology from predicted residue contacts.
Protein Science 21, 299-305 PubMed abstract
Taylor, WR; Morley, R; Krasavin, A; Gregory, L; Wilkinson, DG and Poliakov, A (2012)
A mechanical model of cell segregation driven by differential adhesion.
PLOS ONE 7, e43226 PubMed abstract
Dekker, C; Willison, KR and Taylor, WR (2011)
On the evolutionary origin of the chaperonins.
Proteins 79, 1172-1192 PubMed abstract
Hollup, SM; Fuglebakk, E; Taylor, WR and Reuter, N (2011)
Exploring the factors determining the dynamics of different protein folds.
Protein Science 20, 197-209 PubMed abstract
Hollup, SM; Sadowski, MI; Jonassen, I and Taylor, WR (2011)
Exploring the limits of fold discrimination by structural alignment: A large scale benchmark using decoys of known fold.
Computational Biology and Chemistry 35, 174-188 PubMed abstract
Sadowski, MI; Maksimiak, K and Taylor, WR (2011)
Direct correlation analysis improves fold recognition.
Computational Biology and Chemistry 35, 323-332 PubMed abstract
Taylor, W; Katsimitsoulia, Z and Poliakov, A (2011)
Simulation of cell movement and interaction.
Journal of Bioinformatics and Computational Biology 9, 91-110 PubMed abstract
Taylor, WR and Sadowski, MI (2011)
Structural constraints on the covariance matrix derived from multiple aligned protein sequences.
PLOS ONE 6, e28265
Goldstone, DC; Yap, MW; Robertson, LE; Haire, LF; Taylor, WR; Katzourakis, A; Stoye, JP and Taylor, IA (2010)
Structural and functional analysis of prehistoric lentiviruses uncovers an ancient molecular interface.
Cell Host & Microbe 8, 248-259 PubMed abstract
Grainger, B; Sadowski, MI and Taylor, WR (2010)
Re-evaluating the "rules" of protein topology.
Journal of Computational Biology 17, 1253-1266 PubMed abstract
Katsimitsoulia, Z and Taylor, WR (2010)
A hierarchic collision detection algorithm for simple Brownian dynamics.
Computational Biology and Chemistry 34, 71-79 PubMed abstract
Macdonald, JT; Maksimiak, K; Sadowski, MI and Taylor, WR (2010)
De novo backbone scaffolds for protein design.
Proteins 78, 1311-1325 PubMed abstract
Sadowski, MI and Taylor, WR (2010)
On the evolutionary origins of "Fold Space Continuity": A study of topological convergence and divergence in mixed alpha-beta domains.
Journal of Structural Biology 172, 244-252 PubMed abstract
Sadowski, MI and Taylor, WR (2010)
Protein structures, folds and fold spaces.
Journal of Physics-Condensed Matter 22, 033103
Taylor, WR and Katsimitsoulia, Z (2010)
A coarse-grained molecular model for actin-myosin simulation.
Journal of Molecular Graphics & Modelling 29, 266-279 PubMed abstract
Taylor, WR and Katsimitsoulia, Z (2010)
A soft collision detection algorithm for simple Brownian dynamics.
Computational Biology and Chemistry 34, 1-10 PubMed abstract
Margueron, R; Justin, N; Ohno, K; Sharpe, ML; Son, J; Drury III, WJ; Voigt, P; Martin, SR; Taylor, WR; De Marco, V; Pirrotta, V; Reinberg, D and Gamblin, SJ (2009)
Role of the polycomb protein EED in the propagation of repressive histone marks.
Nature 461, 762-767 PubMed abstract
Mortuza, GB; Goldstone, DC; Pashley, C; Haire, LF; Palmarini, M; Taylor, WR; Stoye, JP and Taylor, IA (2009)
Structure of the capsid amino terminal domain from the Betaretrovirus, Jaagsiekte sheep retrovirus.
Journal of Molecular Biology 386, 1179-1192 PubMed abstract
Taylor, WR; Chelliah, V; Hollup, SM; MacDonald, JT and Jonassen, I (2009)
Probing the "dark matter" of protein fold space.
Structure 17, 1244-1252 PubMed abstract
Bartlett, GJ and Taylor, WR (2008)
Using scores derived from statistical coupling analysis to distinguish correct and incorrect folds in de-novo protein structure prediction.
Proteins 71, 950-959 PubMed abstract
Chelliah, V and Taylor, WR (2008)
Functional site prediction selects correct protein models.
BMC Bioinformatics 9, S13 PubMed abstract
Hollup, SM; Taylor, WR and Jonassen, I (2008)
Structural fragments in protein model refinement.
Protein and Peptide Letters 15, 964-971 PubMed abstract
Taylor, WR; Bartlett, GJ; Chelliah, V; Klose, D; Lin, K; Sheldon, T and Jonassen, I (2008)
Prediction of protein structure from ideal forms.
Proteins 70, 1610-1619 PubMed abstract