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The structure of Nijmegen-breakage syndrome protein 1

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Willie Taylor Publications

Sadowski, MI and Taylor, WR (2012)
Evolutionary inaccuracy of pairwise structural alignments.
Bioinformatics 28, 1209-1215
Taylor, WR; Jones, DT and Sadowski, MI (2012)
Protein topology from predicted residue contacts.
Protein Science 21, 299-305 PubMed abstract
Dekker, C; Willison, KR and Taylor, WR (2011)
On the evolutionary origin of the chaperonins.
Proteins 79, 1172-1192 PubMed abstract
Hollup, SM; Fuglebakk, E; Taylor, WR and Reuter, N (2011)
Exploring the factors determining the dynamics of different protein folds.
Protein Science 20, 197-209 PubMed abstract
Hollup, SM; Sadowski, MI; Jonassen, I and Taylor, WR (2011)
Exploring the limits of fold discrimination by structural alignment: A large scale benchmark using decoys of known fold.
Computational Biology and Chemistry 35, 174-188 PubMed abstract
Sadowski, MI; Maksimiak, K and Taylor, WR (2011)
Direct correlation analysis improves fold recognition.
Computational Biology and Chemistry 35, 323-332 PubMed abstract
Taylor, W; Katsimitsoulia, Z and Poliakov, A (2011)
Simulation of cell movement and interaction.
Journal of Bioinformatics and Computational Biology 9, 91-110 PubMed abstract
Taylor, WR and Sadowski, MI (2011)
Structural constraints on the covariance matrix derived from multiple aligned protein sequences.
PLoS ONE 6, e28265
Goldstone, DC; Yap, MW; Robertson, LE; Haire, LF; Taylor, WR; Katzourakis, A; Stoye, JP and Taylor, IA (2010)
Structural and functional analysis of prehistoric lentiviruses uncovers an ancient molecular interface.
Cell Host & Microbe 8, 248-259 PubMed abstract
Grainger, B; Sadowski, MI and Taylor, WR (2010)
Re-evaluating the "rules" of protein topology.
Journal of Computational Biology 17, 1253-1266 PubMed abstract
Katsimitsoulia, Z and Taylor, WR (2010)
A hierarchic collision detection algorithm for simple Brownian dynamics.
Computational Biology and Chemistry 34, 71-79 PubMed abstract
Macdonald, JT; Maksimiak, K; Sadowski, MI and Taylor, WR (2010)
De novo backbone scaffolds for protein design.
Proteins 78, 1311-1325 PubMed abstract
Sadowski, MI and Taylor, WR (2010)
On the evolutionary origins of "Fold Space Continuity": A study of topological convergence and divergence in mixed alpha-beta domains.
Journal of Structural Biology 172, 244-252 PubMed abstract
Sadowski, MI and Taylor, WR (2010)
Protein structures, folds and fold spaces.
Journal of Physics-Condensed Matter 22, 033103
Taylor, WR and Katsimitsoulia, Z (2010)
A coarse-grained molecular model for actin-myosin simulation.
Journal of Molecular Graphics & Modelling 29, 266-279 PubMed abstract
Taylor, WR and Katsimitsoulia, Z (2010)
A soft collision detection algorithm for simple Brownian dynamics.
Computational Biology and Chemistry 34, 1-10 PubMed abstract
Margueron, R; Justin, N; Ohno, K; Sharpe, ML; Son, J; Drury III, WJ; Voigt, P; Martin, SR; Taylor, WR; De Marco, V; Pirrotta, V; Reinberg, D and Gamblin, SJ (2009)
Role of the polycomb protein EED in the propagation of repressive histone marks.
Nature 461, 762-767 PubMed abstract
Mortuza, GB; Goldstone, DC; Pashley, C; Haire, LF; Palmarini, M; Taylor, WR; Stoye, JP and Taylor, IA (2009)
Structure of the capsid amino terminal domain from the Betaretrovirus, Jaagsiekte sheep retrovirus.
Journal of Molecular Biology 386, 1179-1192 PubMed abstract
Taylor, WR; Chelliah, V; Hollup, SM; MacDonald, JT and Jonassen, I (2009)
Probing the "dark matter" of protein fold space.
Structure 17, 1244-1252 PubMed abstract
Bartlett, GJ and Taylor, WR (2008)
Using scores derived from statistical coupling analysis to distinguish correct and incorrect folds in de-novo protein structure prediction.
Proteins 71, 950-959 PubMed abstract
Chelliah, V and Taylor, WR (2008)
Functional site prediction selects correct protein models.
BMC Bioinformatics 9, S13 PubMed abstract
Hollup, SM; Taylor, WR and Jonassen, I (2008)
Structural fragments in protein model refinement.
Protein and Peptide Letters 15, 964-971 PubMed abstract
Taylor, WR; Bartlett, GJ; Chelliah, V; Klose, D; Lin, K; Sheldon, T and Jonassen, I (2008)
Prediction of protein structure from ideal forms.
Proteins 70, 1610-1619 PubMed abstract
Sheldon, TJ; Miguel-Aliaga, I; Gould, AP; Taylor, WR and Conklin, D (2007)
A novel family of single VWC-domain proteins in invertebrates.
FEBS Letters 581, 5268-5274 PubMed abstract
Taylor, W; Chelliah, V; Klose, D; Sheldon, T; Bartlettt, GJ and Jonassen, I (2007)
Ideal protein forms and their application to de-novo structure prediction.
In: BIOMAT 2006: International Symposium on Mathematical and Computational Biology. Edited by Mondaini, RPDR.
Hackensack, N.J., World Scientific, 2007. 231-246.
Taylor, WR (2007)
Evolutionary transitions in protein fold space.
Current Opinion in Structural Biology 17, 354-361 PubMed abstract
Taylor, WR (2007)
Protein knots and fold complexity: Some new twists.
Computational Biology and Chemistry 31, 151-162 PubMed abstract
Jonassen, I; Klose, D and Taylor, WR (2006)
Protein model refinement using structural fragment tessellation.
Computational Biology and Chemistry 30, 360-366 PubMed abstract
Snell, EA; Brooke, NM; Taylor, WR; Casane, D; Philippe, H and Holland, PWH (2006)
An unusual choanoflagellate protein released by Hedgehog autocatalytic processing.
Proceedings of the Royal Society B: Biological Sciences 273, 401-407 PubMed abstract
Taylor, WR (2006)
Decoy models for protein structure comparison score normalisation.
Journal of Molecular Biology 357, 676-699 PubMed abstract
Taylor, WR (2006)
A molecular model for the origin of protein translation in an RNA world.
Journal of Theoretical Biology 243, 393-406 PubMed abstract
Taylor, WR (2006)
Topological accessibility shows a distinct asymmetry in the folds of βα proteins.
FEBS Letters 580, 5263-5267 PubMed abstract
Taylor, WR (2006)
Transcription and translation in an RNA world.
Philosophical Transactions of the Royal Society B: Biological Sciences 361, 1751-1760 PubMed abstract
Taylor, WR; Lin, K; Klose, D; Fraternali, F and Jonassen, I (2006)
Dynamic domain threading.
Proteins 64, 601-614 PubMed abstract
Vesterstrøm, J and Taylor, WR (2006)
Flexible secondary structure based protein structure comparison applied to the detection of circular permutation.
Journal of Computational Biology 13, 43-62 PubMed abstract