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Richard Goldstein Publications

Liberles, DA; Teichmann, SA; Bahar, I; Bastolla, U; Bloom, J; Bornberg-Bauer, E; Colwell, LJ; de Koning, APJ; Dokholyan, NV; Echave, J; Elofsson, A; Gerloff, DL; Goldstein, RA; Grahnen, JA; Holder, MT; Lakner, C; Lartillot, N; Lovell, SC; Naylor, G; Perica, T; Pollock, DD; Pupko, T; Regan, L; Roger, A; Rubinstein, N; Shakhnovich, E; Sjölander, K; Sunyaev, S; Teufel, AI; Thorne, JL; Thornton, JW; Weinreich, DM and Whelan, S (2012)
The interface of protein structure, protein biophysics, and molecular evolution.
Protein Science [Epub ahead of print] PubMed abstract
Tamuri, AU; dos Reis, M and Goldstein, RA (2012)
Estimating the distribution of selection coefficients from phylogenetic data using sitewise mutation-selection models.
Genetics 190, 1101-1115 PubMed abstract
dos Reis, M; Tamuri, AU; Hay, AJ and Goldstein, RA (2011)
Charting the host adaptation of influenza viruses.
Molecular Biology and Evolution 28, 1755-1767 PubMed abstract
Goldstein, RA (2011)
The evolution and evolutionary consequences of marginal thermostability in proteins.
Proteins 79, 1396-1407 PubMed abstract
Soyer, OS and Goldstein, RA (2011)
Evolution of response dynamics underlying bacterial chemotaxis.
BMC Evolutionary Biology 11, 240 PubMed abstract
Tamuri, AU; dos Reis, M and Goldstein, RA (2011)
Using site-wise mutation-selection models to estimate the distribution of selection coefficients from phylogenetic data.
Genetics [Epub ahead of print] PubMed abstract
Fernando, C; Goldstein, R and Szathmáry, E (2010)
The neuronal replicator hypothesis.
Neural Computation 22, 2809-2857 PubMed abstract
Fernando, C; Valijärvi, R-L and Goldstein, RA (2010)
A model of the mechanisms of language extinction and revitalization strategies to save endangered languages.
Human Biology 82, 47-75 PubMed abstract
Fernando, CT; Goldstein, RA; Husbands, P and Stekel, DJ (2010)
In silico biology.
Pacific Symposium on Biocomputing 477-480 PubMed abstract
Shah, SD; Doorbar, J and Goldstein, RA (2010)
Analysis of host-parasite incongruence in papillomavirus evolution using importance sampling.
Molecular Biology and Evolution 27, 1301-1314 PubMed abstract
dos Reis, M; Hay, AJ and Goldstein, RA (2009)
Using non-homogeneous models of nucleotide substitution to identify host shift events: application to the origin of the 1918 'Spanish' influenza pandemic virus.
Journal of Molecular Evolution 69, 333-345 PubMed abstract
Tamuri, AU; dos Reis, M; Hay, AJ and Goldstein, RA (2009)
Identifying changes in selective constraints: host shifts in influenza.
PLoS Computational Biology 5, e1000564 PubMed abstract
Blackburne, BP; Hay, AJ and Goldstein, RA (2008)
Changing selective pressure during antigenic changes in human influenza H3.
PLoS Pathogens 4, e1000058 PubMed abstract
Goldstein, RA (2008)
The structure of protein evolution and the evolution of protein structure.
Current Opinion in Structural Biology 18, 170-177 PubMed abstract
Goldstein, RA and Soyer, OS (2008)
Evolution of taxis responses in virtual bacteria: non-adaptive dynamics.
PLoS Computational Biology 4, e1000084 PubMed abstract
Stadthagen-Gomez, G; Helguera-Repetto, AC; Cerna-Cortes, JF; Goldstein, RA; Cox, RA and Gonzalez-Y-Merchand, JA (2008)
The organization of two rRNA (rrn) operons of the slow-growing pathogen Mycobacterium celatum provides key insights into mycobacterial evolution.
FEMS Microbiology Letters 280, 102-112 PubMed abstract
Goldstein, RA (2007)
Amino-acid interactions in psychrophiles, mesophiles, thermophiles, and hyperthermophiles: Insights from the quasi-chemical approximation.
Protein Science 16, 1887-1895 PubMed abstract
Goldstein, RA (2006)
Emergent robustness in competition between autocatalytic chemical networks.
Origins of Life and Evolution of the Biosphere 36, 381-389 PubMed abstract
Goldstein, RA and Pollock, DD (2006)
Observations of amino acid gain and loss during protein evolution are explained by statistical bias.
Molecular Biology and Evolution 23, 1444-1449 PubMed abstract
Williams, PD; Pollock, DD; Blackburne, BP and Goldstein, RA (2006)
Assessing the accuracy of ancestral protein reconstruction methods.
PLoS Computational Biology 2, e69, 598-605 PubMed abstract
Williams, PD; Pollock, DD and Goldstein, RA (2006)
Selective advantage of recombination in evolving protein populations: A lattice model study.
International Journal of Modern Physics C 17, 75-90