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Richard Goldstein Publications

Coluzza, I; Macdonald, JT; Sadowski, MI; Taylor, WR and Goldstein, RA (2012)
Analytic Markovian rates for generalized protein structure evolution.
PLOS ONE 7, e34228 PubMed abstract
Liberles, DA; Teichmann, SA; Bahar, I; Bastolla, U; Bloom, J; Bornberg-Bauer, E; Colwell, LJ; de Koning, APJ; Dokholyan, NV; Echave, J; Elofsson, A; Gerloff, DL; Goldstein, RA; Grahnen, JA; Holder, MT; Lakner, C; Lartillot, N; Lovell, SC; Naylor, G; Perica, T; Pollock, DD; Pupko, T; Regan, L; Roger, A; Rubinstein, N; Shakhnovich, E; Sjölander, K; Sunyaev, S; Teufel, AI; Thorne, JL; Thornton, JW; Weinreich, DM and Whelan, S (2012)
The interface of protein structure, protein biophysics, and molecular evolution.
Protein Science 21, 769 - 785 PubMed abstract
Pollock, DD; Thiltgen, G and Goldstein, RA (2012)
Amino acid coevolution induces an evolutionary Stokes shift.
Proceedings of the National Academy of Sciences of the United States of America 109, E1352-E1359 PubMed abstract
Tamuri, AU; dos Reis, M and Goldstein, RA (2012)
Estimating the distribution of selection coefficients from phylogenetic data using sitewise mutation-selection models.
Genetics 190, 1101-1115 PubMed abstract
Tamuri, AU; dos Reis, M and Goldstein, RA (2012)
Using site-wise mutation-selection models to estimate the distribution of selection coefficients from phylogenetic data.
Genetics 90, 1101-1115 PubMed abstract
Thiltgen, G and Goldstein, RA (2012)
Assessing predictors of changes in protein stability upon mutation using self-consistency.
PLOS ONE 7, e46084 PubMed abstract
dos Reis, M; Tamuri, AU; Hay, AJ and Goldstein, RA (2011)
Charting the host adaptation of influenza viruses.
Molecular Biology and Evolution 28, 1755-1767 PubMed abstract
Goldstein, RA (2011)
The evolution and evolutionary consequences of marginal thermostability in proteins.
Proteins 79, 1396-1407 PubMed abstract
Soyer, OS and Goldstein, RA (2011)
Evolution of response dynamics underlying bacterial chemotaxis.
BMC Evolutionary Biology 11, 240 PubMed abstract
Fernando, C; Goldstein, R and Szathmáry, E (2010)
The neuronal replicator hypothesis.
Neural Computation 22, 2809-2857 PubMed abstract
Fernando, C; Valijärvi, R-L and Goldstein, RA (2010)
A model of the mechanisms of language extinction and revitalization strategies to save endangered languages.
Human Biology 82, 47-75 PubMed abstract
Fernando, CT; Goldstein, RA; Husbands, P and Stekel, DJ (2010)
In silico biology.
Pacific Symposium on Biocomputing 477-480 PubMed abstract
Shah, SD; Doorbar, J and Goldstein, RA (2010)
Analysis of host-parasite incongruence in papillomavirus evolution using importance sampling.
Molecular Biology and Evolution 27, 1301-1314 PubMed abstract
dos Reis, M; Hay, AJ and Goldstein, RA (2009)
Using non-homogeneous models of nucleotide substitution to identify host shift events: application to the origin of the 1918 'Spanish' influenza pandemic virus.
Journal of Molecular Evolution 69, 333-345 PubMed abstract
Tamuri, AU; dos Reis, M; Hay, AJ and Goldstein, RA (2009)
Identifying changes in selective constraints: host shifts in influenza.
PLoS Computational Biology 5, e1000564 PubMed abstract
Blackburne, BP; Hay, AJ and Goldstein, RA (2008)
Changing selective pressure during antigenic changes in human influenza H3.
PLOS Pathogens 4, e1000058 PubMed abstract
Goldstein, RA (2008)
The structure of protein evolution and the evolution of protein structure.
Current Opinion in Structural Biology 18, 170-177 PubMed abstract
Goldstein, RA and Soyer, OS (2008)
Evolution of taxis responses in virtual bacteria: non-adaptive dynamics.
PLoS Computational Biology 4, e1000084 PubMed abstract
Stadthagen-Gomez, G; Helguera-Repetto, AC; Cerna-Cortes, JF; Goldstein, RA; Cox, RA and Gonzalez-Y-Merchand, JA (2008)
The organization of two rRNA (rrn) operons of the slow-growing pathogen Mycobacterium celatum provides key insights into mycobacterial evolution.
FEMS Microbiology Letters 280, 102-112 PubMed abstract