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Mike Gilchrist Publications

Evans, AL; Faial, T; Gilchrist, MJ; Down, T; Vallier, L; Pedersen, RA; Wardle, FC and Smith, JC (2012)
Genomic targets of Brachyury (T) in differentiating mouse embryonic stem cells.
PLOS ONE 7, e33346 PubMed abstract
Gilchrist, MJ (2012)
From expression cloning to gene modeling: the development of Xenopus gene sequence resources.
Genesis 50, 143-154 PubMed abstract
Gilchrist, MJ and Pollet, N (2012)
Databases of gene expression in Xenopus development.
Methods in Molecular Biology 917, 319-345 PubMed abstract
Grant, J; Mahadevaiah, SK; Khil, P; Sangrithi, MN; Royo, H; Duckworth, J; McCarrey, JR; VandeBerg, JL; Renfree, MB; Taylor, W; Elgar, G; Camerini-Otero, RD; Gilchrist, MJ and Turner, JM (2012)
Rsx is a metatherian RNA with Xist-like properties in X-chromosome inactivation.
Nature 487, 254-U1511 PubMed abstract
Parain, K; Mazurier, N; Bronchain, O; Borday, C; Cabochette, P; Chesneau, A; Colozza, G; El Yakoubi, W; Hamdache, J; Locker, M; Gilchrist, MJ; Pollet, N and Perron, M (2012)
A large scale screen for neural stem cell markers in Xenopus retina.
Developmental Neurobiology 72, 491-506 PubMed abstract
Simeoni, I; Gilchrist, MJ; Garrett, N; Armisen, J and Gurdon, JB (2012)
Widespread transcription in an amphibian oocyte relates to its reprogramming activity on transplanted somatic nuclei.
Stem cells and development 21, 181-190 PubMed abstract
Viso, F; Bhattacharya, D; Kong, Y; Gilchrist, MJ and Khokha, MK (2012)
Exon capture and bulk segregant analysis: rapid discovery of causative mutations using high-throughput sequencing.
BMC Genomics 13, 649 PubMed abstract
Chiu, W; Blitz, I; Charney, R; Cho, J; Park, E; Gilchrist, M and Cho, KWY (2011)
FoxH1 function in target gene selection and in transcriptional noise control.
Developmental Biology 356, 265
Love, NR; Chen, Y; Bonev, B; Gilchrist, MJ; Fairclough, L; Lea, R; Mohun, TJ; Paredes, R; Zeef, LAH and Amaya, E (2011)
Genome-wide analysis of gene expression during Xenopus tropicalis tadpole tail regeneration.
BMC Developmental Biology 11, 70 PubMed abstract
Hellsten, U; Harland, RM; Gilchrist, MJ; Hendrix, D; Jurka, J; Kapitonov, V; Ovcharenko, I; Putnam, NH; Shu, S; Taher, L; Blitz, IL; Blumberg, B; Dichmann, DS; Dubchak, I; Amaya, E; Detter, JC; Fletcher, R; Gerhard, DS; Goodstein, D; Graves, T; Grigoriev, IV; Grimwood, J; Kawashima, T; Lindquist, E; Lucas, SM; Mead, PE; Mitros, T; Ogino, H; Ohta, Y; Poliakov, AV; Pollet, N; Robert, J; Salamov, A; Sater, AK; Schmutz, J; Terry, A; Vize, PD; Warren, WC; Wells, D; Wills, A; Wilson, RK; Zimmerman, LB; Zorn, AM; Grainger, R; Grammer, T; Khokha, MK; Richardson, PM and Rokhsar, DS (2010)
The genome of the Western clawed frog Xenopus tropicalis.
Science 328, 633-636 PubMed abstract
Nygard, A-B; Cirera, S; Gilchrist, M; Gorodkin, J; Jørgensen, C and Fredholm, M (2010)
A study of alternative splicing in the pig.
BMC Research Notes 3, 123 PubMed abstract
Tassy, O; Dauga, D; Daian, F; Sobral, D; Robin, F; Khoueiry, P; Salgado, D; Fox, V; Caillol, D; Schiappa, R; Laporte, B; Rios, A; Luxardi, G; Kusakabe, T; Joly, J-S; Darras, S; Christiaen, L; Contensin, M; Auger, H; Lamy, C; Hudson, C; Rothbächer, U; Gilchrist, MJ; Makabe, KW; Hotta, K; Fujiwara, S; Satoh, N; Satou, Y and Lemaire, P (2010)
The ANISEED database: Digital representation, formalization, and elucidation of a chordate developmental program.
Genome Research 20, 1459-1468 PubMed abstract
Argasinka, J; Rana, AA; Gilchrist, MJ; Lachani, K; Young, A and Smith, JC (2009)
Loss of REEP4 causes paralysis of the Xenopus embryo.
International Journal of Developmental Biology 53, 37-43 PubMed abstract
Armisen, J; Gilchrist, MJ; Wilczynska, A; Standart, N and Miska, EA (2009)
Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis.
Genome Research 19, 1766-1775 PubMed abstract
Garnett, AT; Han, TM; Gilchrist, MJ; Smith, JC; Eisen, MB; Wardle, FC and Amacher, SL (2009)
Identification of direct T-box target genes in the developing zebrafish mesoderm.
Development 136, 749-760 PubMed abstract
Gilchrist, MJ; Christensen, MB; Bronchain, O; Brunet, F; Chesneau, A; Fenger, U; Geach, TJ; Ironfield, HV; Kaya, F; Kricha, S; Lea, R; Massé, K; Néant, I; Paillard, E; Parain, K; Perron, M; Sinzelle, L; Souopgui, J; Thuret, R; Ymlahi-Ouazzani, Q and Pollet, N (2009)
Database of queryable gene expression patterns for Xenopus.
Developmental Dynamics 238, 1379-1388 PubMed abstract
Morley, RH; Lachani, K; Keefe, D; Gilchrist, MJ; Flicek, P; Smith, JC and Wardle, FC (2009)
A gene regulatory network directed by zebrafish No tail accounts for its roles in mesoderm formation.
Proceedings of the National Academy of Sciences of the United States of America 106, 3829-3834 PubMed abstract
Scheibye-Alsing, K; Hoffmann, S; Frankel, A; Jensen, P; Stadler, PF; Mang, Y; Tommerup, N; Gilchrist, MJ; Nygård, AB; Cirera, S; Jørgensen, CB; Fredholm, M and Gorodkin, J (2009)
Sequence assembly.
Computational Biology and Chemistry 33, 121-136 PubMed abstract
Das, PP; Bagijn, MP; Goldstein, LD; Woolford, JR; Lehrbach, NJ; Sapetschnig, A; Buhecha, HR; Gilchrist, MJ; Howe, KL; Stark, R; Matthews, N; Berezikov, E; Ketting, RF; Tavaré, S and Miska, EA (2008)
Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline.
Molecular Cell 31, 79-90 PubMed abstract
Gilchrist, MJ; Christensen, MB; Harland, R; Pollet, N; Smith, JC; Ueno, N and Papalopulu, N (2008)
Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data.
BMC Bioinformatics 9, 442 PubMed abstract
Lykke-Andersen, K; Gilchrist, MJ; Grabarek, JB; Das, P; Miska, E and Zernicka-Goetz, M (2008)
Maternal Argonaute 2 is essential for early mouse development at the maternal-zygotic transition.
Molecular Biology of the Cell 19, 4383-4392 PubMed abstract
Scheibye-Alsing, K; Cirera, S; Gilchrist, MJ; Fredholm, M and Gorodkin, J (2008)
SNP-finding in pig mitochondrial ESTs.
Animal Genetics 39, 193-195 PubMed abstract
Subkhankulova, T; Gilchrist, MJ and Livesey, FJ (2008)
Modelling and measuring single cell RNA expression levels find considerable transcriptional differences among phenotypically identical cells.
BMC Genomics 9, 268 PubMed abstract
von Hofsten, J; Elworthy, S; Gilchrist, MJ; Smith, JC; Wardle, FC and Ingham, PW (2008)
Prdm1- and Sox6-mediated transcriptional repression specifies muscle fibre type in the zebrafish embryo.
EMBO Reports 9, 683-689 PubMed abstract
Zimyanin, VL; Belaya, K; Pecreaux, J; Gilchrist, MJ; Clark, A; Davis, I and St Johnston, D (2008)
In vivo imaging of oskar mRNA transport reveals the mechanism of posterior localization.
Cell 134, 843-853 PubMed abstract