MRC National Institute for Medical Research, London

Jim Smith Publications

• Evans, AL; Faial, T; Gilchrist, MJ; Down, T; Vallier, L; Pedersen, RA; Wardle, FC and Smith, JC (2012)
  Genomic targets of Brachyury (T) in differentiating mouse embryonic stem cells.
  PLoS ONE 7, e33346 PubMed abstract
• Bernardo, AS; Faial, T; Gardner, L; Niakan, KK; Ortmann, D; Senner, CE; Callery, EM; Trotter, MW; Hemberger, M; Smith, JC; Bardwell, L; Moffett, A and Pedersen, RA (2011)
  BRACHYURY and CDX2 mediate BMP-induced differentiation of human and mouse pluripotent stem cells into embryonic and extraembryonic lineages.
  Cell Stem Cell 9, 144-155 PubMed abstract
• Collart, C; Christov, CP; Smith, JC and Krude, T (2011)
  The mid-blastula transition defines the onset of Y RNA-dependent DNA replication in Xenopus laevis.
  Molecular and Cellular Biology 31, 3857-3387 PubMed abstract
• Rana, AA; Roper, SJ; Palmer, EA and Smith, JC (2011)
  Loss of Xenopus tropicalis EMSY causes impairment of gastrulation and upregulation of p53.
  New Biotechnology 28, 334-341 PubMed abstract
• Callery, EM; Thomsen, GH and Smith, JC (2010)
  A divergent Tbx6-related gene and Tbx6 are both required for neural crest and intermediate mesoderm development in Xenopus.
  Developmental Biology 340, 75-87 PubMed abstract
• Cannon, JE; Upton, PD; Smith, JC and Morrell, NW (2010)
  Intersegmental vessel formation in zebrafish: requirement for VEGF but not BMP signalling revealed by selective and non-selective BMP antagonists.
  British Journal of Pharmacology 161, 140-149 PubMed abstract
• Harvey, SA; Tümpel, S; Dubrulle, J; Schier, AF and Smith, JC (2010)
  no tail integrates two modes of mesoderm induction.
  Development 137, 1127-1135 PubMed abstract
• Argasinka, J; Rana, AA; Gilchrist, MJ; Lachani, K; Young, A and Smith, JC (2009)
  Loss of REEP4 causes paralysis of the Xenopus embryo.
  International Journal of Developmental Biology 53, 37-43 PubMed abstract
• Collart, C; Ramis, JM; Down, TA and Smith, JC (2009)
  Smicl is required for phosphorylation of RNA polymerase II and affects 3'-end processing of RNA at the midblastula transition in Xenopus.
  Development 136, 3451-3461 PubMed abstract
• Garnett, AT; Han, TM; Gilchrist, MJ; Smith, JC; Eisen, MB; Wardle, FC and Amacher, SL (2009)
  Identification of direct T-box target genes in the developing zebrafish mesoderm.
  Development 136, 749-760 PubMed abstract
• Hagemann, AI; Xu, X; Nentwich, O; Hyvonen, M and Smith, JC (2009)
  Rab5-mediated endocytosis of activin is not required for gene activation or long-range signalling in Xenopus.
  Development 136, 2803-2813 PubMed abstract
• Harvey, SA and Smith, JC (2009)
  Visualisation and quantification of morphogen gradient formation in the zebrafish.
  PLoS Biology 7, e1000101 PubMed abstract
• Morley, R; Lachani, K; Keefe, D; Nelson, A; Gilchrist, M; Flicek, P; Smith, J and Wardle, F (2009)
  A gene regulatory network for mesoderm directed by zebrafish No tail.
  Mechanisms of Development 126, S285-S286 PubMed abstract
• Morley, RH; Lachani, K; Keefe, D; Gilchrist, MJ; Flicek, P; Smith, JC and Wardle, FC (2009)
  A gene regulatory network directed by zebrafish No tail accounts for its roles in mesoderm formation.
  Proceedings of the National Academy of Sciences of the United States of America 106, 3829-3834 PubMed abstract
• Nentwich, O; Dingwell, KS; Nordheim, A and Smith, JC (2009)
  Downstream of FGF during mesoderm formation in Xenopus: the roles of Elk-1 and Egr-1.
  Developmental Biology 336, 313-326 PubMed abstract
• Smith, J (2009)
  The cell cycle and beyond: an interview with Paul Nurse.
  Disease Models & Mechanisms 2, 113-115 PubMed abstract
• Smith, J (2009)
  Hello goodbye.
  Development 136, 4065 PubMed abstract
• Smith, JC (2009)
  Forming and interpreting gradients in the early Xenopus embryo.
  Cold Spring Harbor Perspectives in Biology 1, a002477 PubMed abstract
• Alfred, J and Smith, J (2008)
  Pointing a digit at digitised JEEM.
  Development 135, 2339 PubMed abstract
• Colas, A; Cartry, J; Buisson, I; Umbhauer, M; Smith, JC and Riou, J-F (2008)
  Mix.1/2-dependent control of FGF availability during gastrulation is essential for pronephros development in Xenopus.
  Developmental Biology 320, 351-365 PubMed abstract
• Eisen, JS and Smith, JC (2008)
  Controlling morpholino experiments: don't stop making antisense.
  Development 135, 1735-1743 PubMed abstract
• Gilchrist, MJ; Christensen, MB; Harland, R; Pollet, N; Smith, JC; Ueno, N and Papalopulu, N (2008)
  Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data.
  BMC Bioinformatics 9, 442 PubMed abstract
• Jones, CM and Smith, JC (2008)
  Mesoderm induction assays.
  Methods in Molecular Biology 461, 396-404 PubMed abstract
• Jones, CM and Smith, JC (2008)
  Wholemount in situ hybridization to Xenopus embryos.
  Methods in Molecular Biology 461, 697-702 PubMed abstract
• Papanayotou, C; Mey, A; Birot, A-M; Saka, Y; Boast, S; Smith, JC; Samarut, J and Stern, CD (2008)
  A mechanism regulating the onset of Sox2 expression in the embryonic neural plate.
  PLoS Biology 6, e2 PubMed abstract
• Saka, Y; Hagemann, AI and Smith, JC (2008)
  Visualizing protein interactions by bimolecular fluorescence complementation in Xenopus.
  Methods 45, 192-195 PubMed abstract
• Sevilla, LM; Rana, AA; Watt, FM and Smith, JC (2008)
  KazrinA is required for axial elongation and epidermal integrity in Xenopus tropicalis.
  Developmental Dynamics 237, 1718-1725 PubMed abstract
• Smith, J and Alfred, J (2008)
  Whither Development and developmental biology?
  Development 135, 1 PubMed abstract
• Smith, JC; Hagemann, A; Saka, Y and Williams, PH (2008)
  Understanding how morphogens work.
  Philosophical Transactions of the Royal Society B: Biological Sciences 363, 1387-1392 PubMed abstract
• von Hofsten, J; Elworthy, S; Gilchrist, MJ; Smith, JC; Wardle, FC and Ingham, PW (2008)
  Prdm1- and Sox6-mediated transcriptional repression specifies muscle fibre type in the zebrafish embryo.
  EMBO Reports 9, 683-689 PubMed abstract
• Borner, GH; Rana, AA; Forster, R; Harbour, M; Smith, JC and Robinson, MS (2007)
  CVAK104 is a novel regulator of clathrin-mediated SNARE sorting.
  Traffic 8, 893-903 PubMed abstract
• Ramis, JM; Collart, C and Smith, JC (2007)
  Xnrs and activin regulate distinct genes during Xenopus development: activin regulates cell division.
  PLoS ONE 2, e213 PubMed abstract
• Saka, Y; Hagemann, A; Piepenburg, O and Smith, JC (2007)
  Nuclear accumulation of Smad complexes occurs only after the midblastula transition in Xenopus.
  Development 134, 4209-4218 PubMed abstract
• Saka, Y and Smith, J (2007)
  A mechanism for the sharp transition of morphogen gradient interpretation in Xenopus.
  BMC Developmental Biology 7, 47 PubMed abstract
• Smith, J; Wardle, F; Loose, M; Stanley, E and Patient, R (2007)
  Germ layer induction in ESC-following the vertebrate roadmap.
  In: Current Protocols in Stem Cell Biology.
  2007. 1D.1.1-1D.1.22.
• Surani, A and Smith, J (2007)
  Obituary: Anne McLaren (1927-2007).
  Nature 448, 764-765 PubMed abstract
• Dingwell, KS and Smith, JC (2006)
  Tes regulates neural crest migration and axial elongation in Xenopus.
  Developmental Biology 293, 252-267 PubMed abstract
• Knapp, D; Messenger, N; Rana, AA and Smith, JC (2006)
  Neurotrophin Receptor Homolog (NRH1) proteins regulate mesoderm formation and apoptosis during early Xenopus development.
  Developmental Biology 300, 554-569 PubMed abstract
• Rana, AA; Collart, C; Gilchrist, MJ and Smith, JC (2006)
  Defining synphenotype groups in Xenopus tropicalis by use of antisense morpholino oligonucleotides.
  PLoS Genetics 2, e193 PubMed abstract
• Seitan, VC; Banks, P; Laval, S; Majid, NA; Dorsett, D; Rana, A; Smith, J; Bateman, A; Krpic, S; Hostert, A; Rollins, RA; Erdjument-Bromage, H; Tempst, P; Benard, CY; Hekimi, S; Newbury, S and Strachan, T (2006)
  Metazoan Scc4 homologs link sister chromatid cohesion to cell and axon migration guidance.
  PLoS Biology 4, e242 PubMed abstract
• Smith, J and Alfred, J (2006)
  Development: moving on in 2006.
  Development 133, 1-2 PubMed abstract
• Stern, CD; Charité, J; Deschamps, J; Duboule, D; Durston, AJ; Kmita, M; Nicolas, J-F; Palmeirim, I; Smith, JC and Wolpert, L (2006)
  Head-tail patterning of the vertebrate embryo: one, two or many unresolved problems?
  International Journal of Developmental Biology 50, 3-15 PubMed abstract
• Wardle, FC; Odom, DT; Bell, GW; Yuan, B; Danford, T; Wiellette, EL; Herbolsheimer, E; Sive, HL; Young, RA and Smith, JC (2006)
  Zebrafish promoter microarrays identify actively transcribed embryonic genes.
  Genome Biology 7, R71 PubMed abstract
• Wolpert, L; Smith, J; Jessell, T; Lawrence, P; Robertson, E and Meyerowitz, E
  Principles of Development. 3rd edition edition.
  Oxford University Press, 2006.

[Page last updated 1 May 2012]