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Jim Smith Publications

Cannon, JE; Place, ES; Eve, AMJ; Bradshaw, CR; Sesay, A; Morrell, NW and Smith, JC (2013)
Global analysis of the haematopoietic and endothelial transcriptome during zebrafish development.
Mechanisms of Development 130, 122-131 PubMed abstract
Mohun, T; Adams, DJ; Baldock, R; Bhattacharya, S; Copp, AJ; Hemberger, M; Houart, C; Hurles, ME; Robertson, E; Smith, JC; Weaver, T and Weninger, W (2013)
Deciphering the Mechanisms of Developmental Disorders (DMDD): a new programme for phenotyping embryonic lethal mice.
Disease Models & Mechanisms [Epub ahead of print] PubMed abstract
Smith, JJ; Kuraku, S; Holt, C; Sauka-Spengler, T; Jiang, N; Campbell, MS; Yandell, MD; Manousaki, T; Meyer, A; Bloom, OE; Morgan, JR; Buxbaum, JD; Sachidanandam, R; Sims, C; Garruss, AS; Cook, M; Krumlauf, R; Wiedemann, LM; Sower, SA; Decatur, WA; Hall, JA; Amemiya, CT; Saha, NR; Buckley, KM; Rast, JP; Das, S; Hirano, M; McCurley, N; Guo, P; Rohner, N; Tabin, CJ; Piccinelli, P; Elgar, G; Ruffier, M; Aken, BL; Searle, SMJ; Muffato, M; Pignatelli, M; Herrero, J; Jones, M; Brown, CT; Chung-Davidson, Y-W; Nanlohy, KG; Libants, SV; Yeh, C-Y; McCauley, DW; Langeland, JA; Pancer, Z; Fritzsch, B; de Jong, PJ; Zhu, B; Fulton, LL; Theising, B; Flicek, P; Bronner, ME; Warren, WC; Clifton, SW; Wilson, RK and Li, W (2013)
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution.
Nature Genetics [Epub ahead of print] PubMed abstract
Callery, EM; Park, CY; Xu, X; Zhu, H; Smith, JC and Thomsen, GH (2012)
Eps15R is required for bone morphogenetic protein signalling and differentially compartmentalizes with Smad proteins.
Open Biology 2, 120060 PubMed abstract
Evans, AL; Faial, T; Gilchrist, MJ; Down, T; Vallier, L; Pedersen, RA; Wardle, FC and Smith, JC (2012)
Genomic targets of Brachyury (T) in differentiating mouse embryonic stem cells.
PLOS ONE 7, e33346 PubMed abstract
Bernardo, AS; Faial, T; Gardner, L; Niakan, KK; Ortmann, D; Senner, CE; Callery, EM; Trotter, MW; Hemberger, M; Smith, JC; Bardwell, L; Moffett, A and Pedersen, RA (2011)
BRACHYURY and CDX2 mediate BMP-induced differentiation of human and mouse pluripotent stem cells into embryonic and extraembryonic lineages.
Cell Stem Cell 9, 144-155 PubMed abstract
Collart, C; Christov, CP; Smith, JC and Krude, T (2011)
The mid-blastula transition defines the onset of Y RNA-dependent DNA replication in Xenopus laevis.
Molecular and Cellular Biology 31, 3857-3387 PubMed abstract
Rana, AA; Roper, SJ; Palmer, EA and Smith, JC (2011)
Loss of Xenopus tropicalis EMSY causes impairment of gastrulation and upregulation of p53.
New Biotechnology 28, 334-341 PubMed abstract
Callery, EM; Thomsen, GH and Smith, JC (2010)
A divergent Tbx6-related gene and Tbx6 are both required for neural crest and intermediate mesoderm development in Xenopus.
Developmental Biology 340, 75-87 PubMed abstract
Cannon, JE; Upton, PD; Smith, JC and Morrell, NW (2010)
Intersegmental vessel formation in zebrafish: requirement for VEGF but not BMP signalling revealed by selective and non-selective BMP antagonists.
British Journal of Pharmacology 161, 140-149 PubMed abstract
Harvey, SA; Tümpel, S; Dubrulle, J; Schier, AF and Smith, JC (2010)
no tail integrates two modes of mesoderm induction.
Development 137, 1127-1135 PubMed abstract
Argasinka, J; Rana, AA; Gilchrist, MJ; Lachani, K; Young, A and Smith, JC (2009)
Loss of REEP4 causes paralysis of the Xenopus embryo.
International Journal of Developmental Biology 53, 37-43 PubMed abstract
Collart, C; Ramis, JM; Down, TA and Smith, JC (2009)
Smicl is required for phosphorylation of RNA polymerase II and affects 3'-end processing of RNA at the midblastula transition in Xenopus.
Development 136, 3451-3461 PubMed abstract
Garnett, AT; Han, TM; Gilchrist, MJ; Smith, JC; Eisen, MB; Wardle, FC and Amacher, SL (2009)
Identification of direct T-box target genes in the developing zebrafish mesoderm.
Development 136, 749-760 PubMed abstract
Hagemann, AI; Xu, X; Nentwich, O; Hyvonen, M and Smith, JC (2009)
Rab5-mediated endocytosis of activin is not required for gene activation or long-range signalling in Xenopus.
Development 136, 2803-2813 PubMed abstract
Harvey, SA and Smith, JC (2009)
Visualisation and quantification of morphogen gradient formation in the zebrafish.
PLOS Biology 7, e1000101 PubMed abstract
Morley, R; Lachani, K; Keefe, D; Nelson, A; Gilchrist, M; Flicek, P; Smith, J and Wardle, F (2009)
A gene regulatory network for mesoderm directed by zebrafish No tail.
Mechanisms of Development 126, S285-S286 PubMed abstract
Morley, RH; Lachani, K; Keefe, D; Gilchrist, MJ; Flicek, P; Smith, JC and Wardle, FC (2009)
A gene regulatory network directed by zebrafish No tail accounts for its roles in mesoderm formation.
Proceedings of the National Academy of Sciences of the United States of America 106, 3829-3834 PubMed abstract
Nentwich, O; Dingwell, KS; Nordheim, A and Smith, JC (2009)
Downstream of FGF during mesoderm formation in Xenopus: the roles of Elk-1 and Egr-1.
Developmental Biology 336, 313-326 PubMed abstract
Smith, J (2009)
The cell cycle and beyond: an interview with Paul Nurse.
Disease Models & Mechanisms 2, 113-115 PubMed abstract
Smith, J (2009)
Hello goodbye.
Development 136, 4065 PubMed abstract
Smith, JC (2009)
Forming and interpreting gradients in the early Xenopus embryo.
Cold Spring Harbor Perspectives in Biology 1, a002477 PubMed abstract
Alfred, J and Smith, J (2008)
Pointing a digit at digitised JEEM.
Development 135, 2339 PubMed abstract
Colas, A; Cartry, J; Buisson, I; Umbhauer, M; Smith, JC and Riou, J-F (2008)
Mix.1/2-dependent control of FGF availability during gastrulation is essential for pronephros development in Xenopus.
Developmental Biology 320, 351-365 PubMed abstract
Eisen, JS and Smith, JC (2008)
Controlling morpholino experiments: don't stop making antisense.
Development 135, 1735-1743 PubMed abstract
Gilchrist, MJ; Christensen, MB; Harland, R; Pollet, N; Smith, JC; Ueno, N and Papalopulu, N (2008)
Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data.
BMC Bioinformatics 9, 442 PubMed abstract
Jones, CM and Smith, JC (2008)
Mesoderm induction assays.
Methods in Molecular Biology 461, 396-404 PubMed abstract
Jones, CM and Smith, JC (2008)
Wholemount in situ hybridization to Xenopus embryos.
Methods in Molecular Biology 461, 697-702 PubMed abstract
Papanayotou, C; Mey, A; Birot, A-M; Saka, Y; Boast, S; Smith, JC; Samarut, J and Stern, CD (2008)
A mechanism regulating the onset of Sox2 expression in the embryonic neural plate.
PLOS Biology 6, e2 PubMed abstract
Saka, Y; Hagemann, AI and Smith, JC (2008)
Visualizing protein interactions by bimolecular fluorescence complementation in Xenopus.
Methods 45, 192-195 PubMed abstract
Sevilla, LM; Rana, AA; Watt, FM and Smith, JC (2008)
KazrinA is required for axial elongation and epidermal integrity in Xenopus tropicalis.
Developmental Dynamics 237, 1718-1725 PubMed abstract
Smith, J and Alfred, J (2008)
Whither Development and developmental biology?
Development 135, 1 PubMed abstract
Smith, JC; Hagemann, A; Saka, Y and Williams, PH (2008)
Understanding how morphogens work.
Philosophical Transactions of the Royal Society B: Biological Sciences 363, 1387-1392 PubMed abstract
von Hofsten, J; Elworthy, S; Gilchrist, MJ; Smith, JC; Wardle, FC and Ingham, PW (2008)
Prdm1- and Sox6-mediated transcriptional repression specifies muscle fibre type in the zebrafish embryo.
EMBO Reports 9, 683-689 PubMed abstract